{ "_id": "6a12c3bbacfb0bcc41d1e769", "Package": "lmQCM", "Type": "Package", "Title": "An Algorithm for Gene Co-Expression Analysis", "Version": "0.2.4", "Date": "2022-10-09", "Authors@R": "c(person(\"Zhi\", \"Huang\", email = \"hz9423@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Jie\", \"Zhang\", email = \"jizhan@iu.edu\", role = c(\"aut\", \"ctb\")),\nperson(\"Kun\", \"Huang\", email = \"kunhuang@iu.edu\", role = c(\"aut\", \"ctb\")),\nperson(\"Zhi\", \"Han\", email = \"zhihan@iu.edu\", role = c(\"aut\", \"ctb\"))\n)", "Author": "Zhi Huang [aut, cre], Jie Zhang [aut, ctb], Kun Huang [aut,\nctb], Zhi Han [aut, ctb]", "Maintainer": "Zhi Huang ", "Description": "Implementation based on Zhang, Jie & Huang, Kun (2014)\n Normalized ImQCM: An Algorithm for\nDetecting Weak Quasi-Cliques in Weighted Graph with\nApplications in Gene Co-Expression Module Discovery in Cancers.\nCancer informatics, 13, CIN-S14021.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "URL": "https://github.com/huangzhii/lmQCM/", "BugReports": "https://github.com/huangzhii/lmQCM/issues/", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://huangzhii.r-universe.dev", "Date/Publication": "2022-10-12 20:36:59 UTC", "RemoteUrl": "https://github.com/huangzhii/lmqcm", "RemoteRef": "HEAD", "RemoteSha": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 09:19:52 UTC", "User": "root" }, "MD5sum": "007da50ff5df25ef61a343a910344bf5", "_user": "huangzhii", "_type": "src", "_file": "lmQCM_0.2.4.tar.gz", "_fileid": "857a812e9cfb19b41553f50b58ea2b3d04dd810942843d40cb950bea13834878", "_filesize": 90842, "_sha256": "857a812e9cfb19b41553f50b58ea2b3d04dd810942843d40cb950bea13834878", "_created": "2026-05-24T09:19:52.000Z", "_published": "2026-05-24T09:24:11.918Z", "_distro": "noble", "_jobs": [ { "job": 77586591886, "time": 216, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7183997885" }, { "job": 77586591889, "time": 220, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7183998238" }, { "job": 77586591896, "time": 191, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7183992324" }, { "job": 77586591887, "time": 169, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7183990991" }, { "job": 77586373932, "time": 227, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7183975240" }, { "job": 77586591876, "time": 140, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183990270" }, { "job": 77586591907, "time": 162, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7183992478" }, { "job": 77586591906, "time": 156, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7183991926" }, { "job": 77586591904, "time": 170, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7183993195" } ], "_buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/huangzhii/lmqcm", "_commit": { "id": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "author": "huangzhii ", "committer": "huangzhii ", "message": "update from MBP16\n", "time": 1665607019 }, "_maintainer": { "name": "Zhi Huang", "email": "hz9423@gmail.com" }, "_registered": true, "_dependencies": [ { "package": "genefilter", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "progress", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" } ], "_owner": "huangzhii", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 4, "_contributors": [ { "user": "huangzhii", "count": 26, "uuid": 10902358 } ], "_userbio": { "uuid": 10902358, "type": "user", "name": "Zhi Huang", "description": "Energy = milk × coffee²" }, "_downloads": { "count": 211, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lmQCM" }, "_mentions": 12, "_devurl": "https://github.com/huangzhii/lmqcm", "_searchresults": 15, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/lmQCM.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/huangzhii/lmqcm", "_realowner": "huangzhii", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2018-03-19" }, { "version": "0.1.1", "date": "2018-06-28" }, { "version": "0.1.2", "date": "2018-09-12" }, { "version": "0.2.0", "date": "2019-02-20" }, { "version": "0.2.1", "date": "2019-03-12" }, { "version": "0.2.2", "date": "2021-01-14" }, { "version": "0.2.3", "date": "2021-03-03" }, { "version": "0.2.4", "date": "2022-10-10" } ], "_exports": [ "fastFilter", "lmQCM", "localMaximumQCM", "merging_lmQCM" ], "_help": [ { "page": "fastFilter", "title": "fastFilter: Subroutine for filtering expression matrix", "topics": [ "fastFilter" ] }, { "page": "lmQCM", "title": "lmQCM: Main Routine for Gene Co-expression Analysis", "topics": [ "lmQCM" ] }, { "page": "localMaximumQCM", "title": "localMaximumQCM: Subroutine for Creating Gene Clusters", "topics": [ "localMaximumQCM" ] }, { "page": "merging_lmQCM", "title": "merging_lmQCM: Subroutine for Merging Gene Clusters", "topics": [ "merging_lmQCM" ] } ], "_readme": "https://github.com/huangzhii/lmqcm/raw/HEAD/README.md", "_rundeps": [ "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "genefilter", "generics", "glue", "hms", "httr", "IRanges", "jsonlite", "KEGGREST", "lattice", "lifecycle", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "openssl", "pkgconfig", "png", "prettyunits", "progress", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "survival", "sys", "vctrs", "XML", "xtable", "XVector" ], "_score": 4.477121254719663, "_indexed": true, "_nocasepkg": "lmqcm", "_universes": [ "huangzhii" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.4", "date": "2026-05-24T09:22:24.000Z", "distro": "noble", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "72fa34bc9b0e691170278120aad17d6be9c904b207284a232fa3d74d8b53c5e8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" }, { "r": "4.6.0", "os": "linux", "version": "0.2.4", "date": "2026-05-24T09:22:25.000Z", "distro": "noble", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "22deabcee5e2e588a8169487d5bae6fdf60acc1dd40f2c6959178d37805af341", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" }, { "r": "4.5.3", "os": "mac", "version": "0.2.4", "date": "2026-05-24T09:22:00.000Z", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "ad4507d5d63982b7c02ff2ba04b41d0a8425f0962576d3eafbd2e7c739ceabc9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" }, { "r": "4.6.0", "os": "mac", "version": "0.2.4", "date": "2026-05-24T09:21:46.000Z", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "cfa1d469cee794242be9920e7915f666d54354b6236dddb2c12534227aa35da4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.4", "date": "2026-05-24T09:22:34.000Z", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "4b9a249fc0a8374cda37caff1ea2831f6558f60810e75112faee966d2f67359f", "status": "success", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" }, { "r": "4.7.0", "os": "win", "version": "0.2.4", "date": "2026-05-24T09:21:22.000Z", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "a125ae9a87668a4926c5ed78689de4416e23286ca16b7564698474fc7fe94943", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" }, { "r": "4.5.3", "os": "win", "version": "0.2.4", "date": "2026-05-24T09:21:22.000Z", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "362d1b70c27f87b3282b12b6f6038c03a08641359119254b7593fd560ebb3d91", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" }, { "r": "4.6.0", "os": "win", "version": "0.2.4", "date": "2026-05-24T09:21:27.000Z", "commit": "586da1915f2a28b9ab2387c72bb17e54a962b04c", "fileid": "0982910603b257f9ebbc56e4de9ddeabdf5506ff90ec00dbb1bb50d4b8dc3cec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/huangzhii/actions/runs/26357327378" } ] }